RNA Metabolism

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Sortable Table - Users

Software Package Version Installed (Date) Tested (Date) Status Comment
GNU LPK 4.47 2012-02-24 http://www.gnu.org/software/glpk/
RNAstructureScript 2012-02-13
NAMD 2.9 not installed yet http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=NAMD
Snoopy not installed yet http://www-dssz.informatik.tu-cottbus.de/software/snoopy.html
RNAG 2012-01-26
Haddock 2.1 not installed yet http://www.nmr.chem.uu.nl/haddock/download.html
AmberTools 13 not installed yet http://ambermd.org/AmberTools-get.html
Vienna RNA package with MSbind 2.0 not installed yet http://kks.inf.kcl.ac.uk/MSbind.html
RUM pipeline not installed yet http://cbil.upenn.edu/RUM
RNASLOpt 2012-3-3 http://genome.ucf.edu/RNASLOpt
FusionSEQ not installed yet http://rnaseq.gersteinlab.org/fusionseq/
gfold not installed yet http://www.combinatorics.cn/cbpc/gfold.tar.gz
microPred not installed yet
MAGIC Tool 2.1 not installed yet http://www.bio.davidson.edu/projects/magic/download.html
Farsight not installed yet http://www.farsight-toolkit.org/wiki/Source_code
Open-Curve Snake not installed yet http://www.farsight-toolkit.org/wiki/Open_Snake_Tracing_System
Chaste Computational Physiology Library 3.1 not installed yet http://www.cs.ox.ac.uk/chaste
Siconos not installed yet https://gforge.inria.fr/frs/?group_id=9
BIOCHAM 3.5 not installed yet http://contraintes.inria.fr/BIOCHAM/
STEPP not installed yet http://www.bioinformatik.uni-frankfurt.de/tools/stepp/stepp.html
Mona Lisa not installed yet http://www.bioinformatik.uni-frankfurt.de/tools/monalisa/
MacroMolecularBuilder 2.12 not installed yet https://simtk.org/project/xml/downloads.xml?group_id=359
Nucleic Acid Simulation Tool 1.0 not installed yet https://simtk.org/project/xml/downloads.xml?group_id=59#package_id58
ModeRNA 1.7.1 not installed yet http://genesilico.pl/moderna/download/
Rosetta 3.4 not installed yet https://www.rosettacommons.org/
etomica not installed yet http://rheneas.eng.buffalo.edu/wiki/Source:Core
RNA2D3D not installed yet http://www-lmmb.ncifcrf.gov/users/bshapiro/rna2d3d/rna2d3d.html
G2G not installed yet I have downloaded this onto my older Windows 2013Summer/SimBio
MC-Tools not installed yet http://www.major.iric.ca/MajorLabEn/MC-Tools.htm
BNlearn R package not installed yet CRAN
Snow R package not installed yet CRAN
BioTapestry not installed yet http://www.BioTapestry.org/
ShapeKnots not installed yet http://rna.urmc.rochester.edu
Vanesa not installed yet http://vanesa.sf.net
Alon Lab network motif not installed yet http://www.weizmann.ac.il/mcb/UriAlon/
RNAfold human use, at their site http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi