Difference between revisions of "HPC Software"

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:[http://becat.uconn.edu/hpc/software/ List of software] installed on the HORNET cluster
 
:[http://becat.uconn.edu/hpc/software/ List of software] installed on the HORNET cluster
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== Software Guides ==
 
:[[Abaqus Guide]] - How to use Abaqus FEA 6.12
 
:[[Abaqus Guide]] - How to use Abaqus FEA 6.12
 
:[[Comsol Guide]] - How to use COMSOL on Hornet Cluster
 
:[[Comsol Guide]] - How to use COMSOL on Hornet Cluster
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:[[Trinity Guide]] - How to use the Trinity RNA Sequence Assembler (in progress)
 
:[[Trinity Guide]] - How to use the Trinity RNA Sequence Assembler (in progress)
 
:[[VASP Guide]] - How to use VASP
 
:[[VASP Guide]] - How to use VASP
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== Other Software Guidelines ==
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===GCC===
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On Westmere nodes
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$ module load gcc/4.7.1
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on Sandy Bridge nodes
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$ module load gcc/4.8.2
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=== R-LINE ===
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$module load rline/1.2
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Then run:
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$ RLINE

Revision as of 12:30, 13 February 2014

List of software installed on the HORNET cluster

Software Guides

Abaqus Guide - How to use Abaqus FEA 6.12
Comsol Guide - How to use COMSOL on Hornet Cluster
DXA Guide - How to use Dislocation Extraction Algorithm
GPU Mathematica Guide - How to run Wolfram Mathematica with GPU acceleration
Grace Guide - How to run grace / xmgrace with GUI
Hadoop Guide - How to use hadoop software
Intel SDK Guide - How to use Intel Cluster Studio XE 2013 (in progress)
LS-Dyna Guide - How to use LS-DYNA
MAPLE Guide - How to use MAPLE on Hornet cluster
MATLAB Guide - How to submit MATLAB jobs
Modules Guide - How to manage and load environment modules
MPI Guide - A Quick Guide to Programming with MPI
MPJ Guide - MPJ (Java MPI)
MPICH2 Guide - How to use MPICH2 on the Hornet cluster
NAMD Guide - How to use NAMD on the Hornet cluster
OpenACC Guide - How to use OpenACC on the Hornet cluster
OpenMp Usage - how to use OpenMp on the Hornet cluster
phpbb - How to use phpbb
Python virtualenv Guide - How to use virtualenv for python
Qiime Guide - How to use Qiime on the Hornet cluster (in progress)
R Guide - How to use GNU R on Hornet cluster
Screenie Guide - How to use Screenie / GNU Screen
StarCCM Guide - How to use StarCCM (in progress)
Trinity Guide - How to use the Trinity RNA Sequence Assembler (in progress)
VASP Guide - How to use VASP

Other Software Guidelines

GCC

On Westmere nodes

$ module load gcc/4.7.1

on Sandy Bridge nodes

$ module load gcc/4.8.2

R-LINE

$module load rline/1.2

Then run:

$ RLINE