Difference between revisions of "HPC Software"
From Storrs HPC Wiki
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:[http://becat.uconn.edu/hpc/software/ List of software] installed on the HORNET cluster | :[http://becat.uconn.edu/hpc/software/ List of software] installed on the HORNET cluster | ||
| + | == Software Guides == | ||
:[[Abaqus Guide]] - How to use Abaqus FEA 6.12 | :[[Abaqus Guide]] - How to use Abaqus FEA 6.12 | ||
:[[Comsol Guide]] - How to use COMSOL on Hornet Cluster | :[[Comsol Guide]] - How to use COMSOL on Hornet Cluster | ||
| Line 25: | Line 26: | ||
:[[Trinity Guide]] - How to use the Trinity RNA Sequence Assembler (in progress) | :[[Trinity Guide]] - How to use the Trinity RNA Sequence Assembler (in progress) | ||
:[[VASP Guide]] - How to use VASP | :[[VASP Guide]] - How to use VASP | ||
| + | == Other Software Guidelines == | ||
| + | ===GCC=== | ||
| + | On Westmere nodes | ||
| + | $ module load gcc/4.7.1 | ||
| + | on Sandy Bridge nodes | ||
| + | $ module load gcc/4.8.2 | ||
| + | === R-LINE === | ||
| + | $module load rline/1.2 | ||
| + | Then run: | ||
| + | $ RLINE | ||
Revision as of 12:30, 13 February 2014
- List of software installed on the HORNET cluster
Software Guides
- Abaqus Guide - How to use Abaqus FEA 6.12
- Comsol Guide - How to use COMSOL on Hornet Cluster
- DXA Guide - How to use Dislocation Extraction Algorithm
- GPU Mathematica Guide - How to run Wolfram Mathematica with GPU acceleration
- Grace Guide - How to run grace / xmgrace with GUI
- Hadoop Guide - How to use hadoop software
- Intel SDK Guide - How to use Intel Cluster Studio XE 2013 (in progress)
- LS-Dyna Guide - How to use LS-DYNA
- MAPLE Guide - How to use MAPLE on Hornet cluster
- MATLAB Guide - How to submit MATLAB jobs
- Modules Guide - How to manage and load environment modules
- MPI Guide - A Quick Guide to Programming with MPI
- MPJ Guide - MPJ (Java MPI)
- MPICH2 Guide - How to use MPICH2 on the Hornet cluster
- NAMD Guide - How to use NAMD on the Hornet cluster
- OpenACC Guide - How to use OpenACC on the Hornet cluster
- OpenMp Usage - how to use OpenMp on the Hornet cluster
- phpbb - How to use phpbb
- Python virtualenv Guide - How to use virtualenv for python
- Qiime Guide - How to use Qiime on the Hornet cluster (in progress)
- R Guide - How to use GNU R on Hornet cluster
- Screenie Guide - How to use Screenie / GNU Screen
- StarCCM Guide - How to use StarCCM (in progress)
- Trinity Guide - How to use the Trinity RNA Sequence Assembler (in progress)
- VASP Guide - How to use VASP
Other Software Guidelines
GCC
On Westmere nodes
$ module load gcc/4.7.1
on Sandy Bridge nodes
$ module load gcc/4.8.2
R-LINE
$module load rline/1.2
Then run:
$ RLINE
