Difference between revisions of "HPC Software"

Revision as of 12:36, 13 February 2014

List of software installed on the HORNET cluster

Software Guides

Abaqus Guide - How to use Abaqus FEA 6.12

Comsol Guide - How to use COMSOL on Hornet Cluster

DXA Guide - How to use Dislocation Extraction Algorithm

GPU Mathematica Guide - How to run Wolfram Mathematica with GPU acceleration

Grace Guide - How to run grace / xmgrace with GUI

Hadoop Guide - How to use hadoop software

Intel SDK Guide - How to use Intel Cluster Studio XE 2013 (in progress)

LS-Dyna Guide - How to use LS-DYNA

MAPLE Guide - How to use MAPLE on Hornet cluster

MATLAB Guide - How to submit MATLAB jobs

Modules Guide - How to manage and load environment modules

MPI Guide - A Quick Guide to Programming with MPI

MPJ Guide - MPJ (Java MPI)

MPICH2 Guide - How to use MPICH2 on the Hornet cluster

NAMD Guide - How to use NAMD on the Hornet cluster

OpenACC Guide - How to use OpenACC on the Hornet cluster

OpenMp Usage - how to use OpenMp on the Hornet cluster

phpbb - How to use phpbb

Python virtualenv Guide - How to use virtualenv for python

Qiime Guide - How to use Qiime on the Hornet cluster (in progress)

R Guide - How to use GNU R on Hornet cluster

Screenie Guide - How to use Screenie / GNU Screen

StarCCM Guide - How to use StarCCM (in progress)

Trinity Guide - How to use the Trinity RNA Sequence Assembler (in progress)

VASP Guide - How to use VASP

Other Software Guidelines

GCC

On Westmere nodes

$ module load gcc/4.7.1

on Sandy Bridge nodes

$ module load gcc/4.8.2

GEOS-Chem

$ module load intelics/2012.0.032 zlib/1.2.3-ics hdf5/1.8.9-ics netcdf/4.2-ics geos-chem/v9-02

Grace

$ module load intelics/2013.1.039-compiler libjpeg-turbo libpng zlib/1.2.8-ics motif grace/5.1.23

Gaussian

$ module load gaussian/g09d01

LAMMPS

$ module load lammps/23Sep13

R-LINE

$module load rline/1.2

Then run:

$ RLINE