Revision as of 08:03, 22 February 2019

Current Supported Versions in HPC

Import Modules

TensorFlow v0.10.0rc0 (CPU Support Only)

module load python/2.7.6

TensorFlow v1.2.0 (Both GPU and CPU Support)

module load cuda/8.0.61 cudnn/6.0 sqlite/3.18.0 tcl/8.6.6.8606 python/3.6.1

TensorFlow v0.12.1 (Both GPU and CPU Support)

module load cuda/8.0.61 cudnn/6.0 python/2.7.6-gcc-unicode

Notice:

• 1: This version supports both CPU and GPU.
• 2: You should see the following auto-output, which means the gpu dependence libraries have been loaded successfully.

 I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcurand.so locally
 I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcuda.so.1 locally
 I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcufft.so locally
 I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcudnn.so.6 locally
 I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcublas.so locally

• 3: You will get the error below if you run python in normal computing node. Please do not worry about it! This just mean the gpu feature is unavailable due to current node isn't GPU node. You can still use cpu for calculation without any problem.

 E tensorflow/stream_executor/cuda/cuda_driver.cc:509] failed call to cuInit: CUresult(-1)
 I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:145] kernel driver does not appear to be running on this host (cn02): /proc/driver/nvidia/version does not exist

Application Usage

Check Version Number

 $ python
 Python 2.7.6 (default, Apr 20 2016, 16:39:52) 
 [GCC 4.8.2] on linux2
 Type "help", "copyright", "credits" or "license" for more information.
 >>> import tensorflow as tf
 >>> print tf.__version__
 0.12.1
 >>>

Example: How to Build Computational Graph

$ python
Python 2.7.6 (default, Apr 20 2016, 16:39:52) 
[GCC 4.8.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import tensorflow as tf
>>> node1 = tf.constant(3.0, tf.float32)
>>> node2 = tf.constant(4.0)
>>> node3 = tf.add(node1, node2)
>>> sess = tf.Session()
>>> sess.run(node3)
7.0
>>> a = tf.placeholder(tf.float32)
>>> b = tf.placeholder(tf.float32)
>>> adder_node = a + b
>>> print(sess.run(adder_node, {a: 3, b:4.5}))
7.5
>>> print(sess.run(adder_node, {a: [1,3], b: [2, 4]}))
[ 3.  7.]
>>> add_and_triple = adder_node * 3
>>> print(sess.run(add_and_triple, {a: 3, b:4.5}))
22.5
>>>

Example: Logging Device placement (GPU Version Guide)

hpc-xin@cn02:~$ ssh gpu01
hpc-xin@gpu01:~$ module purge
hpc-xin@gpu01:~$ module load cuda/8.0.61 cudnn/6.0 python/2.7.6-gcc-unicode
hpc-xin@gpu01:~$ python
Python 2.7.6 (default, Apr 20 2016, 16:39:52) 
[GCC 4.8.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import tensorflow as tf
I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcurand.so locally
I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcuda.so.1 locally
I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcufft.so locally
I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcudnn.so.6 locally
I tensorflow/stream_executor/dso_loader.cc:128] successfully opened CUDA library libcublas.so locally
>>> a = tf.constant([1.0, 2.0, 3.0, 4.0, 5.0, 6.0], shape=[2, 3], name='a')
>>> b = tf.constant([1.0, 2.0, 3.0, 4.0, 5.0, 6.0], shape=[3, 2], name='b')
>>> c = tf.matmul(a, b)
>>> sess = tf.Session(config=tf.ConfigProto(log_device_placement=True))
I tensorflow/core/common_runtime/gpu/gpu_device.cc:975] Creating TensorFlow device (/gpu:0) -> (device: 0, name: Tesla K40m, pci bus id: 0000:03:00.0)
I tensorflow/core/common_runtime/gpu/gpu_device.cc:975] Creating TensorFlow device (/gpu:1) -> (device: 1, name: Tesla K40m, pci bus id: 0000:82:00.0)
Device mapping:
/job:localhost/replica:0/task:0/gpu:0 -> device: 0, name: Tesla K40m, pci bus id: 0000:03:00.0
/job:localhost/replica:0/task:0/gpu:1 -> device: 1, name: Tesla K40m, pci bus id: 0000:82:00.0
I tensorflow/core/common_runtime/direct_session.cc:255] Device mapping:
/job:localhost/replica:0/task:0/gpu:0 -> device: 0, name: Tesla K40m, pci bus id: 0000:03:00.0
/job:localhost/replica:0/task:0/gpu:1 -> device: 1, name: Tesla K40m, pci bus id: 0000:82:00.0
>>> print(sess.run(c))
MatMul: (MatMul): /job:localhost/replica:0/task:0/gpu:0
I tensorflow/core/common_runtime/simple_placer.cc:827] MatMul: (MatMul)/job:localhost/replica:0/task:0/gpu:0
b: (Const): /job:localhost/replica:0/task:0/gpu:0
I tensorflow/core/common_runtime/simple_placer.cc:827] b: (Const)/job:localhost/replica:0/task:0/gpu:0
a: (Const): /job:localhost/replica:0/task:0/gpu:0
I tensorflow/core/common_runtime/simple_placer.cc:827] a: (Const)/job:localhost/replica:0/task:0/gpu:0
Const: (Const): /job:localhost/replica:0/task:0/cpu:0
I tensorflow/core/common_runtime/simple_placer.cc:827] Const: (Const)/job:localhost/replica:0/task:0/cpu:0
[[ 22.  28.]
 [ 49.  64.]]

You can run this code by tensorflow 1.2.0 in python 3.6.1 as well. You will get the same result but a little bit different intermediate automatic output.

More Examples

https://www.tensorflow.org/tutorials/

Python Packages depend on Tensorflow

Keras

Keras has been installed in both python/2.7.6-gcc-unicode, python/3.6.1 and 3.6.3-gcc540a. Please make sure both cuda/8.0.61 and cudnn/6.0 have been loaded before using Keras.
official website: https://keras.io/